Scalable deoxygenative alkynylation of alcohols via flow photochemistry

Scalable deoxygenative alkynylation of alcohols via flow photochemistry


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ABSTRACT Internal alkynes are often contained in bioactive pharmaceuticals and crucial intermediates in material sciences, yet their production methods are often limited and challenging,


necessitating the development of more efficient and versatile synthetic routes. Here we report a method of deoxygenative alkynylation of alcohols via flow photochemistry. Formation of


_N_-heterocyclic carbene-alcohol adducts undergoes oxidation by a photocatalyst, generating alkyl radicals. These radicals are subsequently trapped by an alkynylation agent, yielding the


desired alkyne. Compared to batch reactions, the strategy using flow photochemistry is practical and efficient to complete the reaction in relatively short time with good yields. A wide


range of functional groups were tolerated. The broad application of this method for alkyne synthesis in industry settings is anticipated, supported by the potential in late-stage


functionalization of biomolecules and gram-scale synthesis. SIMILAR CONTENT BEING VIEWED BY OTHERS MODULAR ALKENE SYNTHESIS FROM CARBOXYLIC ACIDS, ALCOHOLS AND ALKANES VIA INTEGRATED


PHOTOCATALYSIS Article 27 September 2024 PHOTOCATALYTIC DEOXYGENATIVE _Z_-SELECTIVE OLEFINATION OF ALIPHATIC ALCOHOLS Article Open access 02 April 2025 HIGHLY SCALABLE PHOTOINDUCED SYNTHESIS


OF SILANOLS VIA UNTRAVERSED PATHWAY FOR CHLORINE RADICAL (CL•) GENERATION Article Open access 09 December 2023 INTRODUCTION Internal alkynes exist in various natural products1 and are also


widely used in drug discovery and material sciences for the synthesis of antibiotics2,3, antifungals4, polymers and liquid crystal materials5,6. The unique reactivity of alkynes also makes


them valuable as precious building blocks, including heterocycles, alkenes, and carbonyl compounds7,8. Transition metal-catalyzed Sonogashira coupling reaction is a common method for


synthesizing internal alkynes9,10,11. Under the catalysis of metal catalysts like palladium and copper salts, (pseudo)halogenated aromatics or alkanes react with terminal alkynes, which


showed good functional group compatibility12,13,14,15,16. However, this protocol often accompanies a few issues, such as the use of expensive metals and ligands, harsh reaction conditions


and competitive β-H elimination side reactions17. Despite great progress made by researchers by avoiding the utilization of transition metals18,19,20,21,22,23,24,25, there is still a


practical need to develop a mild, efficient and versatile method for synthesizing internal alkynes. Using the electron-deficient type of reagents, visible-light-mediated radical alkynylation


demonstrated the characteristics of mild reaction conditions and adaptation to various precursors, such as carboxylic acids or esters26,27,28,29,30,31, C(sp3)-H substrates32,33,34,35,36,37,


alkyl trifluoroborates38,39 and aldehydes40,41,42, etc.43,44, making it an ideal alternative to Sonogashira reaction (Scheme 1a). However, the deoxyalkynylation of alcohols, which are the


most diverse and commercially available substrates45,46,47, has seldom been reported. In 2016, Fu and co-workers described a visible-light photoredox synthesis of internal alkynes containing


quaternary carbons (Scheme 1b)48; Waser group and Xie group reported a similar visible-light-mediated deoxyalkynylation of activated tertiary alcohols in 2021 (Scheme 1c)49,50. The


limitation of substrates and the additional purification steps associated to the pre-activation step affected the practicality of the above two methods. The direct alkynylation of alcohols


(1°, 2° and 3°) has become an urgent problem that remained to be solved. Since 2021, MacMillan has reported a series of photoredox-enabled deoxygenative arylation51,


alkylation52,53,54,55,56, sulfination57, fluoromethylation58,59, phosphonylation60, and amination61 of alcohols, directly activated by _N,O_-heterocyclic carbenes (NHC) without purification.


This strategy offers a novel approach to sp3-sp2 and sp3-sp3 cross-coupling reactions using widely available alcohol-containing reagents. However, the sp3-sp coupling reaction has not yet


been explored. Additionally, the scalability of product synthesis via photochemistry remains a challenge to be addressed. According to the Bouguer-Lambert-Beer Law, the propagation of the


photons in the reaction mixture decays rapidly, especially in a large photoreactor62,63. This effect significantly prolonged the reaction time and increased energy consumption. Additionally,


it may lead to the formation of by-products, making purification difficult and costly. Nevertheless, flow photochemistry64,65,66,67,68, which combines the advantages of flow chemistry and


photochemistry, can effectively resolve these problems69,70,71,72,73. Herein, we report a practical, efficient, and scalable deoxygenative alkynylation of alcohols, which combines NHC


activation with flow photochemistry (Scheme 1d). RESULTS AND DISCUSSION Following the extensive optimization as described in the Supplementary Information “Reaction Optimization” (Tables 


S1-S6), we provided the ideal reaction conditions as shown in Table 1. 2.0 equiv of _tert_-butyl 4-hydroxypiperidine-1-carboxylate (1) was condensed with NHC-1 affording the NHC-alcohol


adduct in 15 min (see Supplementary Information “General Procedure”), and the adduct then subjected to react with a reaction mixture, including 5 mol%


1,2,3,5-Tetrakis(carbazol-9-yl)-4,6-dicyanobenzene (4CzIPN), 1.0 equiv of ((methylsulfonyl)ethynyl)benzene (2) and 4 equiv of _n_Bu4NPO4H2 in DMF/_t_BuOH, in a polytetrafluoroethylene (PTFE)


capillary under the irradiation of 450 nm LEDs (for reaction setup see Supplementary Information “General information”). The alkynylation reaction completed to provide the product in 77%


yield via flow photochemistry (entry 1). The NHC variant with _p_-CF3 group resulted in a yield reduced to 46% (entry 2). The screening of the alkynylation reagents showed 2 with a simple


methyl group attached to alkyne demonstrating superior atom economy and reactivity to other analogs (entries 3–6). Moreover, other organic bases were also found to give inferior results


(entries 7–9). The attempts in the absence of light or 4CzIPN (entry 10) led to no reaction occurring. Although this sp3-sp coupling reaction can also be performed in a batch reactor,


significantly longer reaction time and yield drop were observed (entry 11). While we were concluding this study, a batch reaction on the deoxyalkynylation of alcohols was reported74.


Compared to the flow photochemistry method, the reported 36-hour reaction time and scalability present practical challenges. Furthermore, the use of their described reagent led to a slower


conversion rate and lower yield (entry 5 vs. entry 1). Under the optimized conditions, we explored the alcohol scope of the deoxygenative alkynylation with 2 (Scheme 2). Inactivated primary


alcohols attached to cyclic alkyl, chain alkyl, and fluorinated alkyl groups formed viable substrates in this reaction, affording 8, 9, and 10 in reasonable yields. Alcohols bearing cyclic


ethers, cyclic and acyclic carbamates provided the corresponding products (11–14) with 42%–55% yields. Primary alcohols with sterically hindered substitution at β position, lactam, and


pyrazole structures were well tolerated to give the desired products (15, 16, and 17) with 43%, 57%, and 56% yields, respectively. Secondary alcohols acted as better substrates for this


alkynylation reaction. Products (18, 19, and 20) were obtained from the corresponding cyclopentyl, cyclohexyl, and 4-phenyl-2-butyl alcohols with good yields (66–70%). Notably,


_exo_-norborneol and the lactone derivative reacted stereoselectively to give the corresponding products 21 (69% yield) and 22 (47% yield) with >20:1 diastereoselective ratio. Other


function groups in secondary alcohols, including ether (23, 24), acetal (25), thioether (26), and carbonyl (27) were compatible with the deoxygenative alkynylation conditions, giving


moderate to good yields (58–85% yield). A variety of medicinally relevant cyclic and acyclic carbamates (28–32) could be obtained by the direct alkynylation from the corresponding alcohols,


yielding the products in fair to good yields (48–82% yield). Additionally, the four-membered ring-containing spirocyclic system, attracting significant attention in drug discovery75, was


successfully alkynylated in 55% (33) and 49% (34) yields. Next, a series of tertiary alcohols were investigated as precursors under the activation of NHC-2, a more electrophilic reagent that


generated the NHC-_tert_-alcohol adduct effectively. To our gratification, except the product (37) derived from arylcyclopropanol, other tertiary alcohols afforded the desired products (35,


36, 38–42) with satisfactory yields (57–82%). Consequently, we turned our attention to the scope of the alkyne reagents. As expected, including thiophenyl alkyne, the substituent groups on


the aromatic rings, such as _p_-CH3, -F, -Cl, and _m_-Br, showed little effect on the yields of products 43–47 (62–88% yields). To further demonstrate the outstanding tolerance of functional


groups and the capability of this deoxygenative alkynylation protocol in late-stage derivatizations, a variety of natural products and their derivatives, as well as a marketed drug


containing the hydroxyl group were subjected to alkynylation under our conditions (Fig. 1). It was found that the secondary alcohols in isoandrosterone and D-Menthol provided the


corresponding products 48 and 49 in good yields, but cedrol containing a tertiary alcohol showed relatively moderate yield (50), probably due to steric hindrance, whereas the


diastereoselectivity was always excellent (>20:1 d.r.). Finally, ospemifene (51), as well as benzyl-protected D-glucopyranose (52) and protected L-proline (53) served as competent vectors


for the deoxygenative alkynylnation of alcohols. Reaction scale-up for photochemical reactions used to be hampered by the poor penetration of light through the reaction mixture in large


batch reactors, which can be overcome by the narrow channel of flow photochemistry. As a result, the synthesis of 3 could be conducted in 10 g scale within 2.5 h by employing flow


photochemistry (Scheme 3a). Moreover, with an additional step, product 3 can be converted to compounds 5448 and 5576, containing useful azido and olefin groups, respectively (Scheme 3b),


which can undergo diverse reactions thereafter. To further investigate reaction mechanism, we conducted the reaction in the presence of TEMPO to detect the generation of radicals, according


to the previously reported sp3-sp3 and sp3-sp2 coupling reactions51,52,53,54,55,56,57,58,59,60,61. As a result, several key intermediates in the reaction were captured: Under standard


conditions, the addition of TEMPO completely inhibited the formation of 3 (see Supplementary Information “Mechanistic experiments”). Meanwhile, compounds 56 and 57 were detected by HRMS


(Scheme 4a), indicating the presence of the alkyl radical (B) and the alkenyl radical (D). Additionally, compound 58 was also detected when the electrophilic reagent BnBr was introduced to


the reaction mixture (Scheme 4b), suggesting the presence of methyl sulfinate (F), which can be converted from the methylsulfonyl radical (E). In summary, we have developed a practical and


efficient method for the visible-light-promoted deoxygenative alkynylation of alcohols via flow photochemistry, utilizing NHC to activate alcohols without purification. This protocol


demonstrated broad compatibility with a wide range of alcohols and good late-stage derivatization possibilities of biomolecules. Gram-scale synthesis further showcased the potential of our


method. METHODS GENERAL PROCEDURE FOR DEOXYGENATIVE ALKYNYLATION OF ALCOHOLS To an oven-dried 25 mL Schlenk tube was added NHC (0.6 mmol, 2.0 equiv), alcohol (0.60 mmol, 2.5 equiv), and


anhydrous methyl _tert_-butyl ether (6 ml). Pyridine (0.6 mmol, 2.0 equiv) was added dropwise, and the suspension was stirred at room temperature under nitrogen atmosphere for 15 min.


Another oven-dried 25 mL Schlenk tube was charged with 4CzIPN (0.015 mmol, 5 mol%), _n_Bu4NPO4H2 (1.2 mmol, 4.00 equiv) and the alkynylation reagent (0.30 mmol, 1.0 equiv). DMF (6 mL) and


_t_BuOH (6 mL) were added to the mixture. The methyl _tert_-butyl ether suspension was transferred to a 10 mL syringe under air. Then a syringe filter and new needle were installed on the


syringe. The methyl _tert_-butyl ether solution was injected through the syringe filter into the DMF/_t_BuOH solution. Then the reaction mixture was transferred to a 20 mL syringe. The LEDs


were turned on and the reaction solution was slowly injected using an injection pump. For primary alcohols, the flow rate was 0.75 mL min−1, 5.8 min residence time; For secondary and


tertiary alcohols, the flow rate was 1.2 mL min−1, 3.6 min residence time. The inner diameter of PTFE capillary is 0.75 mm. For tertiary alcohols, methyl _tert_-butyl ether was replaced by


PhCF3. The mixture in the receiving bottle was diluted with ethyl acetate, washed with H2O and brine. The organic phase was dried with Na2SO4, then filtered, and concentrated _in vacuo_. The


crude product was purified by flash column chromatography. DATA AVAILABILITY All data generated during this study are included in this article and Supplementary Information. Experimental


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Google Scholar  Download references ACKNOWLEDGEMENTS We gratefully acknowledge the financial support from the Research Grants Council of the Hong Kong Special Administrative Region, China


(PolyU 15100021), Hong Kong Polytechnic University (State Key Laboratory of Chemical Biology and Drug Discovery). We thank the University Research Facility in Life Sciences (ULS) of the Hong


Kong Polytechnic University for the technical assistance. AUTHOR INFORMATION AUTHORS AND AFFILIATIONS * State Key Laboratory of Chemical Biology and Drug Discovery, Department of Applied


Biology and Chemical Technology, The Hong Kong Polytechnic University, Hung Hom, Hong Kong SAR, China Pin Xu & Cong Ma Authors * Pin Xu View author publications You can also search for


this author inPubMed Google Scholar * Cong Ma View author publications You can also search for this author inPubMed Google Scholar CONTRIBUTIONS P.X. and C.M. conceived the idea. C.M.


supervised the project and acquired the funding. P.X. conducted the laboratory work. P.X. and C.M. analyzed the data. P.X. and C.M. wrote the manuscript. CORRESPONDING AUTHOR Correspondence


to Cong Ma. ETHICS DECLARATIONS COMPETING INTERESTS The authors declare no competing interests. PEER REVIEW INFORMATION _Communications Chemistry_ thanks the anonymous reviewers for their


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http://creativecommons.org/licenses/by-nc-nd/4.0/. Reprints and permissions ABOUT THIS ARTICLE CITE THIS ARTICLE Xu, P., Ma, C. Scalable deoxygenative alkynylation of alcohols via flow


photochemistry. _Commun Chem_ 7, 276 (2024). https://doi.org/10.1038/s42004-024-01363-4 Download citation * Received: 11 September 2024 * Accepted: 11 November 2024 * Published: 26 November


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