Bacterial transfer of large functional genomic dna into human cells

Bacterial transfer of large functional genomic dna into human cells


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ABSTRACT Efficient transfer of chromosome-based vectors into mammalian cells is difficult, mostly due to their large size. Using a genetically engineered invasive Escherichia coli vector,


alpha satellite DNA cloned in P1-based artificial chromosome was stably delivered into the HT1080 cell line and efficiently generated human artificial chromosomes de novo. Similarly, a large


genomic cystic fibrosis transmembrane conductance regulator (CFTR) construct of 160 kb containing a portion of the CFTR gene was stably propagated in the bacterial vector and transferred


into HT1080 cells where it was transcribed, and correctly spliced, indicating transfer of an intact and functional locus of at least 80 kb. These results demonstrate that bacteria allow the


cloning, propagation and transfer of large intact and functional genomic DNA fragments and their subsequent direct delivery into cells for functional analysis. Such an approach opens new


perspectives for gene therapy. Access through your institution Buy or subscribe This is a preview of subscription content, access via your institution ACCESS OPTIONS Access through your


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FAQs * Contact customer support SIMILAR CONTENT BEING VIEWED BY OTHERS PANEL OF HUMAN CELL LINES WITH HUMAN/MOUSE ARTIFICIAL CHROMOSOMES Article Open access 22 February 2022 EFFICIENT


TARGETED TRANSGENESIS OF LARGE DONOR DNA INTO MULTIPLE MOUSE GENETIC BACKGROUNDS USING BACTERIOPHAGE BXB1 INTEGRASE Article Open access 31 March 2022 FIND AND CUT-AND-TRANSFER (FICAT)


MAMMALIAN GENOME ENGINEERING Article Open access 03 December 2021 ACCESSION CODES ACCESSIONS GENBANK/EMBL/DDBJ * accession number AY299332 * accession numbers AJ563631–AJ563650 * EMBL /


Genbank accession number BN000167 * Genbank / EMBL accession numbers AJ574939–AJ575055 REFERENCES * Shizuya H et al. Cloning and stable maintenance of 300-kilobase-pair fragments of human


DNA in _Escherichia coli_ using an F-factor-based vector. _Biochemistry_ 1992; 89: 8794–8797. CAS  Google Scholar  * Ioannou PA et al. A new bacteriophage P1-derived vector for the


propagation of large human DNA fragments. _Nat Genet_ 1994; 6: 84–89. Article  CAS  Google Scholar  * International Human Genome Mapping Consortium. A physical map of the human genome.


_Nature_ 2001; 409: 934–941. Article  Google Scholar  * Schindelhauer D, Schwarz T . Evidence for a fast, intrachromosomal conversion mechanism from mapping of nucleotide variants within a


homogeneous alpha-satellite DNA array. _Genome Res_ 2002; 12: 1815–1826. Article  CAS  Google Scholar  * Ebersole TA et al. Mammalian artificial chromosome formation from circular alphoid


input DNA does not require telomere repeats. _Hum Mol Genet_ 2000; 9: 1623–1631. Article  CAS  Google Scholar  * Harrington JJ et al. Formation of _de novo_ centromeres and construction of


first-generation human artificial microchromosomes. _Nat Genet_ 1997; 15: 345–355. Article  CAS  Google Scholar  * Ikeno M et al. Construction of YAC-based mammalian artificial chromosomes.


_Nat Biotechnol_ 1998; 16: 431–439. Article  CAS  Google Scholar  * Grimes BR, Rhoades AA, Willard HF . Alpha-satellite DNA and vector composition influence rates of human artificial


chromosome formation. _Mol Ther_ 2002; 5: 798–805. Article  CAS  Google Scholar  * Henning KA et al. Human artificial chromosomes generated by modification of a yeast artificial chromosome


containing both human alpha satellite and single-copy DNA sequences. _Proc Natl Acad Sci USA_ 1999; 96: 592–597. Article  CAS  Google Scholar  * Schueler MG et al. Genomic and genetic


definition of a functional human centromere. _Science_ 2001; 294: 109–115. Article  CAS  Google Scholar  * Kouprina N et al. Cloning of human centromeres by transformation associated


recombination in yeast and generation of functional human artificial chromosomes. _Nucleic Acids Res_ 2003; 31: 922–934. Article  CAS  Google Scholar  * Meija JE et al. Efficiency of _de


novo_ centromere formation in human artificial chromosomes. _Genomics_ 2002; 79: 297–304. Article  Google Scholar  * Ohzeki J, Nakano M, Masumoto H . CENP-B box is required for _de novo_


centromere chromatin assembly on human alphoid DNA. _J Cell Biol_ 2002; 159: 765–775. Article  CAS  Google Scholar  * Meija JE et al. Functional complementation of a genetic deficiency with


human artificial chromosomes. _Am J Hum Genet_ 2001; 69: 315–326. Article  Google Scholar  * Grimes BR et al. Stable gene expression from a human artificial chromosome. _EMBO Rep_ 2001; 21:


910–914. Article  Google Scholar  * Ikeno M et al. Generation of human artificial chromosomes expressing naturally controlled guanosine triphosphate cyclohydrolase I gene. _Genes Cell_ 2002;


7: 1021–1032. Article  CAS  Google Scholar  * Wade-Martins R et al. An infectious transfer and expression system for genomic DNA loci in human and mouse cells. _Nat Biotechnol_ 2001; 19:


1067–1070. Article  CAS  Google Scholar  * Magin-Lachmann C et al. _In vitro_ and _in vivo_ delivery of intact BAC DNA – comparison of different methods. _J Gen Med_ 2004; 6: 195–209.


Article  CAS  Google Scholar  * Courvalin P, Goussard S, Grillot-Courvalin C . Gene transfer from bacteria to mammalian cells. _CR Acad Sci_ 1995; 318: 1207–1212. CAS  Google Scholar  *


Grillot-Courvalin C et al. Functional gene transfer from intracellular bacteria to mammalian cells. _Nat Biotechnol_ 1998; 16: 862–866. Article  CAS  Google Scholar  * Narayanan K, Warburton


PE . DNA modification and functional delivery into human cells using _Escherichia coli_ DH10B. _Nucleic Acids Res_ 2003; 31: e51. Article  Google Scholar  * Laner A, Schwarz T, Christan S,


Schindelhauer D . Suitability of a CMV / EGFP cassette to monitor stable expression from human artificial chromosomes but not transient transfer in the cells forming viable clones.


_Cytogenet Genome Res_ 2004; 107: 9–13. Article  CAS  Google Scholar  * Schindelhauer D et al. An engineered genomic CFTR construct is expressed and correctly spliced in the human lung


sarcoma cell line HT1080. (submitted). * Bachmann BJ . Derivations and genotypes of some mutant derivatives of _Escherichia coli_ K-12. In: Brooks LK, Ingraham JL, Magasanik B, Neidhardt FC,


Schaechter M, Umbarger HE (eds). _Escherichia coli and Salmonella Typhimurium, Cellular and Molecular Biology_. ASM: Washington, 1987, pp 1190–1219. Google Scholar  * Grillot-Courvalin C,


Goussard S, Courvalin P . Bacteria as gene delivery vectors for mammalian cells. _Curr Opin Biotechnol_ 1999; 10: 477–481. Article  CAS  Google Scholar  * Weiss S, Chakraborty T . Transfer


of eukaryotic expression plasmids to mammalian host cells by bacterial carriers. _Curr Opin Biotechnol_ 2001; 12: 467–472. Article  CAS  Google Scholar  * Sizemore DR, Branstrom AA, Sadoff


JC . Attenuated _Shigella_ as a DNA delivery vehicle for DNA-mediated immunization. _Science_ 1995; 270: 299–302. Article  CAS  Google Scholar  * Fajac I et al. Recombinant _Escherichia


coli_ as a gene delivery vector into airway epithelial cells. _J Control Rel_ 2004; 97: 371–381. Article  CAS  Google Scholar  * Darji A et al. Oral somatic transgene vaccination using


attenuated _S. typhimurium_. _Cell_ 1997; 91: 765–775. Article  CAS  Google Scholar  * Dietrich G et al. Delivery of antigen-encoding plasmid DNA into the cytosol of macrophages by


attenuated suicide _Listeria monocytogenes_. _Nat Biotechnol_ 1998; 16: 181–185. Article  CAS  Google Scholar  * Paglia P et al. Gene transfer in dendritic cells, induced by oral DNA


vaccination with _Salmonella typhimurium_, results in protective immunity against a murine fibrosarcoma. _Blood_ 1998; 92: 3172–3176. CAS  PubMed  Google Scholar  * Paglia P et al. _In vivo_


correction of genetic defects of monocyte / macrophages using attenuated _Salmonella_ as oral vectors for targeted gene delivery. _Gene Therapy_ 2000; 7: 1725–1730. Article  CAS  Google


Scholar  * Castagliuolo I et al. Engineered _Escherichia coli_ deliver therapeutic genes to the colonic mucosa of mice. _Gene Therapy_ 12: 1070–1078. * Lipps HJ et al. Chromosome-based


vectors for gene therapy. _Gene_ 2003; 304: 23–33. Article  CAS  Google Scholar  * Klink D et al. Gene delivery systems-gene therapy vectors for cystic fibrosis. _J Cystic Fibrosis_ 2004; 3:


203–212. Article  CAS  Google Scholar  * Narayanan K et al. Efficient and precise engineering of a 200 kb β-globin human / bacterial artificial chromosome in _E. coli_ DH10B using an


inducible homologous recombinant system. _Gene Therapy_ 1999; 6: 442–447. Article  CAS  Google Scholar  * Grillot-Courvalin C, Goussard S, Courvalin P . Wild-type intracellular bacteria


deliver DNA into mammalian cells. _Cell Microbiol_ 2002; 4: 177–186. Article  CAS  Google Scholar  * Rudd MK, Mays RW, Schwartz S, Willard HF . Human artificial chromosomes with alpha


satellite-based de novo centromeres show increased frequency of nondisjunction and anaphase lag. _Mol Cell Biol_ 2003; 23: 7689–7697. Article  CAS  Google Scholar  * Zielenski J et al.


Genomic DNA sequence of the cystic fibrosis transmembrane conductance regulator (CFTR) gene. _Genomics_ 1991; 10: 214–228. Article  CAS  Google Scholar  * Brune W, Ménard C, Heesemann J,


Koszinowski UH . A ribonucleotide reductase homolog of cytomegalovirus and endothelial cell tropism. _Science_ 2001; 291: 303–305. Article  CAS  Google Scholar  * Archidiacano N et al.


Comparative mapping of human alphoid sequences in great apes using fluorescence _in situ_ hybridization. _Genomics_ 1995; 25: 477–484. Article  Google Scholar  * Hulsebos TJ et al.


Assignment of the beta B1 crystallin gene (_CRYBB1_) to human chromosome 22 and mouse chromosome 5. _Genomics_ 1995; 29: 712–718. Article  CAS  Google Scholar  * Grant SGN, Jessee J, Bloom


FR, Hanahan D . Differential plasmid rescue from transgenic mouse DNAs into _Escherichia coli_ methylation-restriction mutants. _Genetics_ 1990; 87: 4645–4649. CAS  Google Scholar  *


Schindelhauer D, Cooke HJ . Efficient combination of large DNA _in vitro_: in gel site specific recombination (IGSSR) of PAC fragments containing alpha satellite DNA and the human HPRT gene


locus. _Nucleic Acids Res_ 1997; 25: 2241–2243. Article  CAS  Google Scholar  * Warburton PE, Willard HF . Genomic analysis of sequence variation in tandemly repeated DNA. Evidence for


localized homogeneous sequence domains within arrays of α-satellite DNA. _J Mol Biol_ 1990; 216: 3–16. Article  CAS  Google Scholar  * Ramalho AS et al. Methods for RNA extraction, cDNA


preparation and analysis of CFTR transcripts. _J Cystic Fibrosis_ 2004; 3: 11–15. Article  CAS  Google Scholar  * Ramalho AS et al. Five percent of normal cystic fibrosis transmembrane


conductance regulator mRNA ameliorates the severity of pulmonary disease in cystic fibrosis. _Am J Respir Cell Mol Biol_ 2002; 27: 619–627. Article  CAS  Google Scholar  * Mickle JE et al. A


mutation in the cystic fibrosis transmembrane conductance regulator gene associated with elevated sweat chloride concentrations in the absence of cystic fibrosis. _Hum Mol Genet_ 1998; 7:


729–735. Article  CAS  Google Scholar  * Chalkley G, Harris AA . Lymphocyte mRNA as a resource for detection of mutations and polymorphisms in the CF gene. _J Med Genet_ 1991; 28: 777–780.


Article  CAS  Google Scholar  Download references ACKNOWLEDGEMENTS This work was supported in part by two grants from l'association Vaincre la Mucoviscidose in 2002–2003 and 2003–2004,


the latter together with the German Association Mukoviszidose e.v. D Schindelhauer was supported by the Deutsche Forschung Gemeinschaft and MD Amaral by research Grant POCTI / 1999 / MGI /


35737 from FCT Portugal. AS Ramalho was a recipient of PhD fellowship SFRH / BD / 3085 / 2000 from FCT, Portugal. We thank C Klein and M Speicher for FISH equipment. AUTHOR INFORMATION


Author notes * A Laner and S Goussard: These authors contributed equally to this work AUTHORS AND AFFILIATIONS * Department of Medical Genetics, Childrens Hospital, Ludwig Maximilians


University, Munich, Germany A Laner, T Schwarz & D Schindelhauer * Unité des Agents Antibactériens, Institut Pasteur, Paris, France S Goussard, P Courvalin & C Grillot-Courvalin *


Centre of Human Genetics, National Institute of Health Dr Ricardo Jorge, Lisboa, Portugal A S Ramalho & M D Amaral * Department of Chemistry and Biochemistry, Faculty of Sciences,


University of Lisboa, Lisboa, Portugal M D Amaral * Institute of Human Genetics, Technical University, Munich, Germany D Schindelhauer * Livestock Biotechnology, Life Sciences Center


Weihenstephan, Freising, Germany D Schindelhauer Authors * A Laner View author publications You can also search for this author inPubMed Google Scholar * S Goussard View author publications


You can also search for this author inPubMed Google Scholar * A S Ramalho View author publications You can also search for this author inPubMed Google Scholar * T Schwarz View author


publications You can also search for this author inPubMed Google Scholar * M D Amaral View author publications You can also search for this author inPubMed Google Scholar * P Courvalin View


author publications You can also search for this author inPubMed Google Scholar * D Schindelhauer View author publications You can also search for this author inPubMed Google Scholar * C


Grillot-Courvalin View author publications You can also search for this author inPubMed Google Scholar RIGHTS AND PERMISSIONS Reprints and permissions ABOUT THIS ARTICLE CITE THIS ARTICLE


Laner, A., Goussard, S., Ramalho, A. _et al._ Bacterial transfer of large functional genomic DNA into human cells. _Gene Ther_ 12, 1559–1572 (2005). https://doi.org/10.1038/sj.gt.3302576


Download citation * Received: 10 February 2005 * Accepted: 22 May 2005 * Published: 23 June 2005 * Issue Date: November 2005 * DOI: https://doi.org/10.1038/sj.gt.3302576 SHARE THIS ARTICLE


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by the Springer Nature SharedIt content-sharing initiative KEYWORDS * gene delivery * bacterial E. coli vector * human artificial chromosome * CFTR