Noids causative agents: week 32 (week ending 13 august 2023)

* UK Health Security Agency Research and analysis NOIDS CAUSATIVE AGENTS: WEEK 32 (WEEK ENDING 13 AUGUST 2023) Updated 2 January 2024 CONTENTS * Statutory notifications of causative agents,

grouped by root organism * Carbapenemase-producing Enterobacterales (CPE) * Other carbapenemase-producing Gram-negative organisms Print this page © Crown copyright 2024 This publication is

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https://www.gov.uk/government/publications/notifiable-diseases-causative-agents-reports-for-2023/noids-causative-agents-week-32-week-ending-13-august-2023 Laboratories in England have a

statutory duty to notify the UK Health Security Agency (UKHSA) of the identification of the following causative agents: * Bacillus anthracis * Bacillus cereus * Bordetella pertussis *

Borrelia spp * Brucella spp * Burkholderia mallei * Burkholderia pseudomallei * Campylobacter spp * Carbapenemase-producing Gram-negative bacteria * Chikungunya virus * Chlamydophila

psittaci * Clostridium botulinum * Clostridium perfringens * Clostridium tetani * Corynebacterium diphtheriae * Corynebacterium ulcerans * Coxiella burnetii * Crimean-Congo haemorrhagic

fever virus * Cryptosporidium spp * Dengue virus * Ebola virus * Entamoeba histolytica * Escherichia coli O 157 * Francisella tularensis * Giardia lamblia * Guanarito virus * Haemophilus

influenzae (invasive) * Hanta virus * Hepatitis A * Hepatitis B * Hepatitis C * Hepatitis D * Hepatitis E * Influenza virus * Junin virus * Kyasanur Forest disease virus * Lassa virus *

Legionella spp * Leptospira interrogans * Listeria monocytogenes * Machupo virus * Marburg virus * Measles virus * Mpox (monkeypox) virus * Mumps virus * Mycobacterium tuberculosis complex *

Neisseria meningitidis * Omsk haemorrhagic fever virus * Plasmodium falciparum * Plasmodium knowlesi * Plasmodium malariae * Plasmodium ovale * Plasmodium vivax * Polio virus * Rabies virus

* Rickettsia spp * Rift Valley fever virus * Rubella virus * Sabia virus * Salmonella spp * SARS coronavirus * Shigella spp * Streptococcus group A (invasive) * Streptococcus pneumoniae

(invasive) * Varicella zoster virus * Variola virus * Vibrio cholerae * West Nile virus * Yellow fever virus * Yersinia pestis STATUTORY NOTIFICATIONS OF CAUSATIVE AGENTS, GROUPED BY ROOT

ORGANISM Totals for the current week compared to the previous 5. WEEK NOTIFICATION RECEIVED 2023/27 2023/28 2023/29 2023/30 2023/31 2023/32 ARBOVIRUSES             West Nile virus - - - - -

2 BACILLUS             Bacillus cereus 30 35 27 15 32 16 BORDETELLA             Bordetella pertussis 5 9 19 10 3 9 BORRELIA             Borrelia burgdorferi 28 29 38 37 60 26 Borrelia sp 6 6

2 4 10 5 Borrelia tillae 1 1 1 - 1 4 BRUCELLA             Brucella sp - - - 1 - - CAMPYLOBACTER             Campylobacter coli 43 46 47 31 31 39 Campylobacter jejuni 337 366 304 278 267 252

Campylobacter lari 1 1 2 1 - - Campylobacter other named 1 - - 2 3 2 Campylobacter sp 1,333 1,249 1,101 1,118 1,177 1,055 Campylobacter upsaliensis 1 1 - 2 - - Campylobacter ureolyticus

(bacteroides corrodens) 1 - 1 - 1 1 CHIKUNGUNYA VIRUS             Chikungunya virus - 4 3 - 1 1 CLOSTRIDIUM             Clostridium perfringens 43 24 25 28 36 31 CORONAVIRUS            

Coronavirus 14 5 7 10 12 11 SARS-CoV-2 antibody indeterminate 88 61 69 124 91 74 SARS-CoV-2 antibody void 4 2 4 6 6 3 SARS-CoV-2 coronavirus (COVID-19) 2,255 2,795 3,222 4,296 5,405 6,447

SARS-CoV-2 coronavirus (COVID-19) indeterminate 34 24 21 24 34 70 SARS-CoV-2 IgG antibody negative 46 56 53 56 45 48 SARS-CoV-2 IgG antibody positive 133 144 169 154 143 141 SARS-CoV-2 total

antibody negative 44 60 65 38 64 59 SARS-CoV-2 total antibody positive 117 155 125 93 150 128 CORYNEBACTERIUM             Corynebacterium diphtheriae 4 1 1 4 3 1 Corynebacterium ulcerans 2

1 - - - 1 COXIELLA             Coxiella burnetii - - - - - 1 CRYPTOSPORIDIUM             Cryptosporidium cuniculus - 1 - - - - Cryptosporidium felis - 1 - - 3 - Cryptosporidium hominis 13 19

7 17 8 6 Cryptosporidium meleagridis 1 1 1 1 - - Cryptosporidium parvum 23 31 13 30 34 18 Cryptosporidium sp 31 28 24 29 32 70 Cryptosporidium ubiquitum - - - 2 - - ENTAMOEBA            

Entamoeba histolytica 2 2 - 1 2 2 ESCHERICHIA             Escherichia coli O 157 20 16 14 17 15 13 FLAVIVIRUSES             Dengue virus 2 5 1 3 9 6 HAEMOPHILUS             Haemophilus

influenzae 66 60 43 57 45 58 Hepatitis viruses             Hepatitis A 13 11 4 10 10 8 Hepatitis B 236 296 310 261 246 259 Hepatitis C 443 364 389 336 421 322 Hepatitis D 5 4 5 5 1 2

Hepatitis E 36 32 38 31 34 27 INFLUENZA VIRUS             Influenza A 57 59 52 57 62 52 Influenza B 15 22 16 17 12 21 Influenza indeterminate - 52 - - - - Influenza ungrouped - 1 1 - 6 5

LEGIONELLA             Legionella longbeachae 1 - 3 - - 1 Legionella other named - - - - 1 - Legionella pneumophila 6 8 13 16 12 6 Legionella sp 3 4 8 9 8 6 LISTERIA             Listeria

monocytogenes 8 3 4 2 9 2 MYCOBACTERIUM             Mycobacterium tuberculosis 96 76 75 78 68 103 NEISSERIA             Neisseria meningitidis 20 16 154 22 17 13 ORTHOPOXVIRUS            

Mpox virus 3 3 2 3 4 2 PARAMYXOVIRUSES             Measles virus 3 4 10 4 2 - Mumps virus 6 5 3 4 3 6 PLASMODIUM             Plasmodium falciparum 4 2 - 1 11 21 Plasmodium ovale - - - - - 2

Plasmodium vivax - - - - - 3 POLYOMAVIRUS             Polyomavirus BK 41 40 48 39 48 43 Polyomavirus JC 19 9 9 8 4 8 Polyomavirus untyped 1 - - 1 - - RICKETTSIA             Rickettsia

mooseri - - 1 - - - Rickettsia prowazekii - - - - 2 - Rickettsia spotted fever - - - - 1 - RUBELLA VIRUS             Rubella virus 1 2 1 3 2 1 SALMONELLA             Other salmonellas 58 59

59 60 36 18 Salmonella agona 5 5 - - - - Salmonella chester - - - - - 5 Salmonella enteritidis 64 65 41 37 36 27 Salmonella infantis 7 9 7 7 - 6 Salmonella newport 6 - - - - - Salmonella sp

19 43 63 40 120 197 Salmonella typhi and paratyphi 7 13 9 7 6 7 Salmonella typhimurium 36 43 36 27 22 14 Salmonella virchow - - - - 5 - SHIGELLA             Shigella boydii - - 1 - - -

Shigella dysenteriae - 1 2 1 1 - Shigella flexneri 11 9 6 9 6 8 Shigella sonnei 20 22 22 26 25 12 Shigella sp 50 46 30 50 65 56 STREPTOCOCCUS             Streptococcus group A 56 69 64 56 66

65 Streptococcus pneumoniae 70 65 236 64 74 59 VIBRIO             Vibrio cholerae - 1 1 2 1 2 CARBAPENEMASE-PRODUCING ENTEROBACTERALES (CPE) For all Carbapenemase-producing Gram-negative

organisms, the reports are de-duplicated by first mention of organism species and resistance mechanism by person in a rolling 52-week period. Note: the numbers presented here do not include

specimens that have been referred to the AMRHAI Reference Unit. WEEK NOTIFICATION RECEIVED 2023/27 2023/28 2023/29 2023/30 2023/31 2023/32 CITROBACTER               Citrobacter spp KPC 1 3 1

1 1 -   NDM 1 1 - - - -   OXA48 1 2 2 5 - 1   VIM 1 - - - - - ENTEROBACTER               Enterobacter cloacae complex IMP 4 - - 1 - -   KPC 2 2 10 9 3 5   NDM 2 - 4 3 3 -   OXA48 2 3 2 2 3

-   VIM 1 - 1 1 - -   Other 2 - 3 1 1 - Other enterobacter spp IMP - - - - 1 -   KPC - 1 - - - -   NDM - 1 1 2 - -   OXA48 - 2 - - - -   VIM - - - 1 - - ESCHERICHIA               Escherichia

coli KPC 4 3 8 7 6 3   NDM 17 12 23 10 8 1   OXA48 10 6 13 6 12 1   Other 1 - 2 - 1 - Escherichia hermannii KPC - - - 1 - - KLEBSIELLA               Klebsiella aerogenes KPC - - - 1 - -

Klebsiella oxytoca KPC - 1 2 3 2 1   NDM - - - 1 2 -   OXA48 - 1 1 1 1 1   VIM 1 - - - - - Klebsiella pneumoniae KPC 13 5 8 6 4 3   NDM 8 9 7 5 2 1   OXA48 5 10 9 9 6 -   VIM - 1 2 - - -  

Other 1 1 2 - - - Klebsiella pneumoniae subsp ozenae NDM 1 - - - - -   Other 1 - - - - - Klebsiella variicola NDM - 1 - - - -   OXA48 - - 1 - - - MORGANELLA               Morganella morganii

OXA48 - - - 1 - - PANTOEA               Pantoea agglomerans KPC - 1 - - - - PROTEUS               Proteus mirabilis NDM - - - 2 - -   OXA48 - - - 1 1 - PROVIDENCIA               Providencia

spp NDM - - - - 1 - RAOULTELLA               Raoultella ornithinolytica KPC - - - - 1 - Other raoultella spp OXA48 - 1 - - - - SERRATIA               Serratia marcescens/ureilytica OXA48 -

- - 1 - - Other serratia spp NDM - - - 1 - -   OXA48 - - - 1 - - OTHER CARBAPENEMASE-PRODUCING GRAM-NEGATIVE ORGANISMS For all Carbapenemase-producing Gram-negative organisms, the reports

are de-duplicated by first mention of organism species and resistance mechanism by person in a rolling 52-week period. Note: the numbers presented here do not include specimens that have

been referred to the AMRHAI Reference Unit. WEEK NOTIFICATION RECEIVED 2023/27 2023/28 2023/29 2023/30 2023/31 2023/32 ACINETOBACTER               Acinetobacter baumannii IMP - - - - 1 -  

NDM - - - 1 - - PSEUDOMONAS               Pseudomonas aeruginosa NDM 1 - - 3 1 -   VIM 1 1 - 1 - -   Other 1 1 1 1 2 - Pseudomonas nitroreducens VIM - - - 1 - - Pseudomonas putida group VIM

- - - 1 - -   Other - - - 1 - - Other pseudomonas spp VIM - - - - 1 1 OTHER                 Other 1 - - - - - Back to top